Awesome Cytodata Awesome

A curated list of awesome cytodata resources.

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Cytodata refers to a community of researchers and resources involved in the image-based profiling of biological phenotypes. These biological phenotypes are typically induced by genetic or chemical perturbations and often represent disease states. Image-based profiling is used to inspect these phenotypes to uncover biological insight including discovering the impact of genetic alterations and determining the mechanism of action of compounds.

This page represents a curated list of software, datasets, landmark publications, and image-based profiling methods. Our goal is to provide researchers, both new and established, a place to discover and document awesome Cytodata resources.

Contents

Datasets

Annotated datasets, including raw images and processed profiles, for image-based profiling of chemical and genetic perturbations.

Raw Images

Chemical Perturbations

Genetic Perturbations

Software

Open source software packages for image-based profiling of biological phenotypes.

Publications

Publications related to image-based profiling.

Reviews

Applications

Methods

Contribute

Contributions welcome! Read the contribution guidelines first.

License

CC0