Cytodata

Image-based profiling of biological phenotypes for computational biologists.

Collection 89 stars GitHub

Datasets

or inferred protein subcellular locations can be downloaded.

Cell painting matched to L1000 profiles in 4 experiments, including compound and genetic screens (Details on GitHub).

3,072 cell painting profiles from 41 genes knocked down with RNA interference (RNAi) in U2OS cells (Access from GitHub).

3,456 cell painting profiles from CRISPR experiments knocking down 59 genes in A549, ES2, and HCC44 cells (Access from GitHub).

Methods for image-based cell profiling in R.

Image processing toolbox for R.

Toolkit for filtering and curation of morphological profiles in Julia.

Methods for image-based cell profiling in Python.

Toolbox to extract quantitative phenotypic descriptors and contextual information for histology and multiplex imaging.