Project Awesome project awesome
♥

Cytodata

Image-based profiling of biological phenotypes for computational biologists.

Collection 90 stars GitHub

Contents

Datasets
Software

Datasets

Raw Images

Human Protein Atlas 13 updated 2y ago

Among other assays, the HPA performed confocal imaging of displaying the location of more than 2/3 of human proteins in cell lines. Raw images or infered protein subcellular locations can be downloaded.

Chemical Perturbations

Haghighi et al. 2021 55 updated 7mo ago

Cell painting matched to L1000 profiles in 4 experiments, including compound and genetic screens (Details on GitHub).

Genetic Perturbations

Singh et al. 2015

3,072 cell painting profiles from 41 genes knocked down with RNA interference (RNAi) in U2OS cells (Access from GitHub).

Unpublished 39 updated 4y ago

3,456 cell painting profiles from CRISPR experiments knocking down 59 genes in A549, ES2, and HCC44 cells (Access from GitHub).

Software