Home / Neuroimaging Neuroimaging Software for analyzing brain data from living subjects. Collection 38 stars GitHub Contents Acquisition Management Quality Assurance and Checking Pipelines BOLD Raw Data Provenance and Automation Imaging Tools MRSI Misc Libraries R MATLAB Acquisition Management DAX 28 updated 6mo ago Distributed Automation for XNAT: use containerization w/YAML defined input/output. Quality Assurance and Checking mrQA 14 updated 2y ago Tools for quality assurance in medical imaging datasets, including protocol compliance. bids-validator 35 updated 6mo ago Validator for the Brain Imaging Data Structure. Pipelines BOLD HALFpipe 119 updated 6mo ago User-friendly software that facilitates reproducible analysis of fMRI data. fmri_processing_scripts 4 updated 8mo ago Legacy pipeline for maximal preprocessing. Raw Data dcm2niix 1.1k updated 10mo ago DICOM to NIfTI converter. heudiconv 276 updated 8mo ago A flexible DICOM converter for organizing brain imaging data into structured directory layouts. med2image 205 updated 1y ago Python CLI tool for generating jpg or png images from DICOM or nifti files. Provenance and Automation niinote 1 updated 6mo ago Add AFNI nifti XML history to header to run and record any command. Part of lncdtools. datalad 637 updated 5mo ago Keep code, data, containers under control with git and git-annex. Esp datalad run --input=... --output=.... Imaging Tools MRSI lcmodel 14 updated 9mo ago Implements linear-combination modeling of magnetic resonance spectroscopy data. Osprey 92 updated 6mo ago An all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo magnetic resonance spectroscopy (MRS) data. Misc hurst (archived) Algorithm to assess intrinsic excitation-inhibition imbalance in MR (Trakoshis et al, eLife, 2020). Libraries R oro.nifti 2 updated 2y ago Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. MATLAB imtool3D_td 48 updated 2y ago 3D Image Viewer with ROI tools for Matlab (NIFTI viewer, Manual segmentation).
