Rohan Dandage

Systems biology

chrov🧬Genomes to proteins, multi-level visualization library

parag🎆Interactive visualization of higher-order graphs in Python

Synthetic biology

beditor🔂A workflow for designing libraries of sgRNAs for CRISPR base editing

Single-cell phenomics

htsimaging🔬Python package for high-throughput single-cell imaging analysis

Machine learning

interpretable🧰Interpretable machine learning toolbox

Bioinformatics

dseq🧱Deep sequencing analysis in dataframes

General-purpose toolbox

roux 🧰Convenience functions in Python

⬆️Solo-coding

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⬇️Collaborative coding:

safepy🕸️Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

SGAtools(🇷)One-stop analysis and visualization of array-based genetic interaction screens

removestar*️⃣Tool to automatically replace 'import *' in Python files with explicit imports

yeast_segmentation🔬User friendly mask-rcnn segmentation for images of yeast cells